Package index • boldR

Ingestion

Read and validate fMRIPrep BIDS derivatives.

read_fmriprep(): Read fMRIPrep BIDS derivatives for a participant
prepare_bold(): Validate and prepare a fMRIPrep object for analysis

Atlases

Atlas-agnostic parcellation schema, built-in atlases, and custom registration.

load_atlas(): Load a parcellation atlas
list_atlases(): List available built-in atlases
register_atlas(): Register a custom brain atlas

Parcellation

Extract ROI-level timeseries from volumetric BOLD data.

parcellate(): Extract ROI-level timeseries from a BOLD image

Voxelwise metrics

Metrics computed at the voxel level.

compute_tsnr(): Compute voxelwise temporal SNR

ROI metrics

Metrics computed at the ROI/parcellation level.

compute_fc(): Compute functional connectivity from parcellated BOLD timeseries
compute_roi_metrics(): Compute summary metrics per ROI

Export

Export analysis-ready outputs for syncR.

export_bold(): Export parcellated BOLD data for syncR

Data

Bundled datasets and palettes.

palette_bold: boldR colour palette

Package

Package-level documentation.

boldR boldR-package: boldR: fMRI BOLD Signal Analysis for Circadian and Sleep Research